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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 449 48

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 261 39

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 188 29

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 171 53

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 115 31

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 186 repositories
  • abiss Public

    Affinity based image segmentation system

    seung-lab/abiss’s past year of commit activity
    C++ 5 GPL-3.0 3 0 1 Updated Feb 13, 2026
  • tile-transcoder Public

    Transfer and convert the file format of image tiles.

    seung-lab/tile-transcoder’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 0 Updated Feb 12, 2026
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 171 BSD-3-Clause 53 84 5 Updated Feb 10, 2026
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 44 BSD-3-Clause 10 17 0 Updated Feb 10, 2026
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 7 MIT 7 1 (1 issue needs help) 2 Updated Feb 8, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 358 91 37 Updated Feb 7, 2026
  • zmesh Public

    Marching Cubes & Mesh Simplification on multi-label 3D images.

    seung-lab/zmesh’s past year of commit activity
    C++ 72 GPL-3.0 9 2 1 Updated Feb 6, 2026
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 449 LGPL-3.0 48 15 4 Updated Feb 5, 2026
  • mapbuffer Public

    Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.

    seung-lab/mapbuffer’s past year of commit activity
    Python 10 BSD-3-Clause 0 3 0 Updated Feb 2, 2026
  • corgie Public

    Command line tool for registration of very large 3D volumes.

    seung-lab/corgie’s past year of commit activity
    Python 15 Apache-2.0 3 29 5 Updated Jan 28, 2026