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    109 repositories

    • openworm.ai

      Public
      Scripts related to use of LLMs and other AI technology in OpenWorm
      HTML
      •
      MIT License
      •3•3•2•2•Updated Feb 12, 2026Feb 12, 2026

    • CE_locomotion

      Public
      Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
      C++
      •5•2•7•2•Updated Feb 11, 2026Feb 11, 2026

    • c302

      Public
      The c302 framework for generating multiscale network models of C. elegans
      simulationopenworm
      Python
      •
      MIT License
      •31•135•8•1•Updated Feb 9, 2026Feb 9, 2026

    • OpenWorm

      Public
      Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
      simulationbiologyopenwormelegans
      Python
      •
      MIT License
      •221•2.9k•41•3•Updated Feb 9, 2026Feb 9, 2026

    • ConnectomeToolbox

      Public
      Information on published connectomics data related to C. elegans
      Python
      •
      MIT License
      •7•4•2•1•Updated Feb 5, 2026Feb 5, 2026

    • openworm.github.io

      Public
      OpenWorm main website
      HTML
      •35•29•14•1•Updated Feb 1, 2026Feb 1, 2026

    • wormbrowser

      Public
      The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
      JavaScript
      •
      Other
      •12•49•1•1•Updated Jan 30, 2026Jan 30, 2026

    • openwormbrowser-ios

      Public
      OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
      Objective-C
      •
      Other
      •14•20•3•2•Updated Jan 20, 2026Jan 20, 2026

    • WCONViewer

      Public
      Python based viewer for WCON files in 2D
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • sibernetic

      Public
      This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
      C
      •
      Other
      •110•383•27•12•Updated Dec 17, 2025Dec 17, 2025

    • Worm3DViewer

      Public
      Test repository for multiple views of the worm in 3D
      Python
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • NicolettiEtAl2024_MN_IN

      Public
      C.elegans motor and interneurons (Nicoletti at al. 2024)
      Python
      •4•0•4•2•Updated Nov 4, 2025Nov 4, 2025

    • hodgkin_huxley_tutorial

      Public
      A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
      Python
      •
      GNU Lesser General Public License v3.0
      •10•49•6•1•Updated Oct 30, 2025Oct 30, 2025

    • wormneuroatlas

      Public
      Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), …
      Python
      •
      GNU General Public License v3.0
      •8•2•0•0•Updated Oct 22, 2025Oct 22, 2025

    • WormWorx

      Public
      C. elegans simulator
      C
      •3•7•1•0•Updated Sep 5, 2025Sep 5, 2025

    • CelegansNeuromechanicalGaitModulation

      Public
      C elegans Neuromechanical Gait Modulation Model
      C
      •7•1•0•0•Updated Aug 1, 2025Aug 1, 2025

    • Blender2NeuroML

      Public
      Conversion script to bring neuron models created in Blender into NeuroML format
      Python
      •
      MIT License
      •5•17•2•0•Updated Jul 25, 2025Jul 25, 2025

    • Worm2D

      Public
      Simulator of 2D worm body models
      C++
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • tierpsy-tracker

      Public
      Multi-Worm Behaviour Tracker. README here:
      Python
      •
      MIT License
      •37•2•0•0•Updated Jun 29, 2025Jun 29, 2025

    • .github

      Public
      The OpenWorm organisation template repository.
      Python
      •0•3•1•0•Updated Jun 19, 2025Jun 19, 2025

    • muscle_model

      Public
      Model of C elegans body wall muscle based on Boyle & Cohen 2008
      Jupyter Notebook
      •
      Other
      •21•48•17•1•Updated May 15, 2025May 15, 2025

    • JohnsonMailler_MuscleModel

      Public
      C. elegans muscle model from Johnson & Mailler 2015
      HTML
      •1•2•3•0•Updated May 15, 2025May 15, 2025

    • NeuroPAL

      Public
      Scripts to analyse and convert NeuroPAL datasets
      neurosciencecelegansopenworm3dneuroml
      Jupyter Notebook
      •0•5•0•0•Updated Apr 29, 2025Apr 29, 2025

    • NicolettiEtAl2019_NeuronModels

      Public
      Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
      Jupyter Notebook
      •2•1•2•0•Updated Apr 28, 2025Apr 28, 2025

    • tracker-commons

      Public
      Compilation of information and code bases related to open-source trackers for C. elegans
      Scala
      •13•14•28•4•Updated Apr 23, 2025Apr 23, 2025

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •2•6•70•27•Updated Apr 18, 2025Apr 18, 2025

    • org.geppetto.frontend

      Public
      Geppetto Java frontend bundle
      Java
      •
      Other
      •24•29•2•4•Updated Apr 3, 2025Apr 3, 2025

    • org.geppetto.datasources

      Public
      Java
      •
      Other
      •2•2•0•5•Updated Mar 28, 2025Mar 28, 2025

    • org.geppetto.core

      Public
      Geppetto core bundle
      Java
      •
      Other
      •10•22•6•7•Updated Mar 28, 2025Mar 28, 2025

    • owmeta-core

      Public
      Core library for owmeta
      Python
      •
      MIT License
      •2•3•41•0•Updated Mar 18, 2025Mar 18, 2025